Index

A

active_time() (in module mousestyles.behavior.metrics) aggregate_data() (in module mousestyles.ultradian) aggregate_interval() (in module mousestyles.ultradian)

aggregate_movement() (in module mousestyles.ultradian) angle_between() (in module mousestyles.path_diversity.path_features) ASs() (mousestyles.intervals.Intervals method)

B

BehaviorTree (class in mousestyles.behavior.behavior_tree)

binary_from_intervals() (in module mousestyles.intervals)

C

clean_movements() (in module mousestyles.path_diversity.clean_movements) cluster_in_strain() (in module mousestyles.classification.clustering) compare_strain() (in module mousestyles.visualization.plot_ultradian) complement() (mousestyles.intervals.Intervals method) compute_accelerations() (in module mousestyles.path_diversity.path_features) compute_advanced() (in module mousestyles.path_diversity.path_features_advanced) compute_angles() (in module mousestyles.path_diversity.path_features) compute_tree() (in module mousestyles.behavior.construct_trees)

connect_gaps() (mousestyles.intervals.Intervals method) connect_gaps_by_rule() (mousestyles.intervals.Intervals method) contains() (mousestyles.intervals.Intervals method) copy() (mousestyles.behavior.behavior_tree.BehaviorTree method) (mousestyles.intervals.Intervals method) create_collapsed_intervals() (in module mousestyles.behavior.metrics) create_intervals() (in module mousestyles.behavior.metrics) create_time_matrix() (in module mousestyles.dynamics)

D

day_to_mouse_average() (in module mousestyles.data.utils) detect_noise() (in module mousestyles.path_diversity.detect_noise) distances() (in module mousestyles.data)

distances_bymouse() (in module mousestyles.data) distances_bystrain() (in module mousestyles.data)

E

exp_inverse_cdf() (in module mousestyles.distribution)

exp_pdf() (in module mousestyles.distribution)

F

filter_path() (in module mousestyles.path_diversity.filter_path) find_best_interval() (in module mousestyles.dynamics) find_cycle() (in module mousestyles.ultradian) fit_dist_all() (in module mousestyles.est_power_param) fit_exponential() (in module mousestyles.est_power_param)

fit_gradient_boosting() (in module mousestyles.classification.classification) fit_hc() (in module mousestyles.classification.clustering) fit_powerlaw() (in module mousestyles.est_power_param) fit_random_forest() (in module mousestyles.classification.classification) fit_svm() (in module mousestyles.classification.classification)

G

get_dist_speed() (in module mousestyles.path_diversity.get_dist_speed) get_optimal_fit_kmeans() (in module mousestyles.classification.clustering) get_optimal_hc_params() (in module mousestyles.classification.clustering) get_prob_matrix_list() (in module mousestyles.dynamics) get_prob_matrix_small_interval() (in module mousestyles.dynamics)

get_pvalues() (in module mousestyles.mww) get_score() (in module mousestyles.dynamics) get_summary() (in module mousestyles.classification.classification) get_travel_distances() (in module mousestyles.distributions.kolmogorov_test) getdistance() (in module mousestyles.est_power_param)

H

hypo_exp_null() (in module mousestyles.GLRT_distribution)

hypo_powerLaw_null() (in module mousestyles.GLRT_distribution)

I

idx_restrict_to_rectangles() (in module mousestyles.data.utils) index_of_first_intersection() (mousestyles.intervals.Intervals method) intersect() (mousestyles.intervals.Intervals method) intersect_with_interval() (mousestyles.intervals.Intervals method)

Intervals (class in mousestyles.intervals) intervals_from_binary() (in module mousestyles.intervals) is_empty() (mousestyles.intervals.Intervals method) ISs() (mousestyles.intervals.Intervals method)

K

kde() (in module mousestyles.kde)

L

load() (mousestyles.intervals.Intervals method) load_all_features() (in module mousestyles.data) load_intervals() (in module mousestyles.data) load_mouseday_features() (in module mousestyles.data) load_movement() (in module mousestyles.data)

load_movement_and_intervals() (in module mousestyles.data) load_start_time_end_time() (in module mousestyles.data) load_time_matrix_dynamics() (in module mousestyles.data) lombscargle_visualize() (in module mousestyles.visualization.plot_lomb_scargle)

M

map_xbins_ybins_to_cage() (in module mousestyles.data.utils) mcmc_simulation() (in module mousestyles.dynamics) measure() (mousestyles.intervals.Intervals method) merge() (mousestyles.behavior.behavior_tree.BehaviorTree static method) mix_strain() (in module mousestyles.ultradian) mouse_to_strain_average() (in module mousestyles.data.utils) mousestyles (module) mousestyles.behavior (module) mousestyles.behavior.behavior (module) mousestyles.behavior.behavior_tree (module) mousestyles.behavior.construct_trees (module) mousestyles.behavior.metrics (module) mousestyles.classification (module) mousestyles.classification.classification (module) mousestyles.classification.clustering (module) mousestyles.data (module) mousestyles.data.utils (module) mousestyles.distribution (module) mousestyles.distributions (module) mousestyles.distributions.kolmogorov_test (module) mousestyles.dynamics (module) mousestyles.est_power_param (module) mousestyles.GLRT_distribution (module) mousestyles.intervals (module)

mousestyles.kde (module) mousestyles.mww (module) mousestyles.path_diversity (module) mousestyles.path_diversity.clean_movements (module) mousestyles.path_diversity.detect_noise (module) mousestyles.path_diversity.filter_path (module) mousestyles.path_diversity.get_dist_speed (module) mousestyles.path_diversity.path_features (module) mousestyles.path_diversity.path_features_advanced (module) mousestyles.path_diversity.path_index (module) mousestyles.path_diversity.smooth_noise (module) mousestyles.ultradian (module) mousestyles.visualization (module) mousestyles.visualization.distribution_plot (module) mousestyles.visualization.dynamics (module) mousestyles.visualization.path_diversity_plotting (module) mousestyles.visualization.plot_classification (module) mousestyles.visualization.plot_clustering (module) mousestyles.visualization.plot_lomb_scargle (module) mousestyles.visualization.plot_path (module) mousestyles.visualization.plot_ultradian (module) MWW_allmice() (in module mousestyles.mww) MWW_mice() (in module mousestyles.mww) MWW_strains() (in module mousestyles.mww)

N

num() (mousestyles.intervals.Intervals method)

P

path_index() (in module mousestyles.path_diversity.path_index) perform_kstest() (in module mousestyles.distributions.kolmogorov_test) plot_box() (in module mousestyles.visualization.path_diversity_plotting) plot_comparison() (in module mousestyles.visualization.plot_classification) plot_cor() (in module mousestyles.mww) plot_cor_multi() (in module mousestyles.mww) plot_dendrogram() (in module mousestyles.visualization.plot_clustering) plot_dynamics() (in module mousestyles.visualization.dynamics) plot_exponential() (in module mousestyles.visualization.distribution_plot) plot_fitted() (in module mousestyles.visualization.distribution_plot) plot_hist() (in module mousestyles.visualization.path_diversity_plotting) plot_lastp_dist() (in module mousestyles.visualization.plot_clustering)

plot_path() (in module mousestyles.visualization.plot_path) plot_performance() (in module mousestyles.visualization.plot_classification) plot_powerlaw() (in module mousestyles.visualization.distribution_plot) plot_relative_dist() (in module mousestyles.visualization.distribution_plot) plot_strain_cluster() (in module mousestyles.visualization.plot_clustering) plot_strain_seasonal() (in module mousestyles.visualization.plot_ultradian) powerlaw_inverse_cdf() (in module mousestyles.distribution) powerlaw_pdf() (in module mousestyles.distribution) prep_data() (in module mousestyles.classification.classification) (in module mousestyles.classification.clustering) process_raw_intervals() (in module mousestyles.behavior.construct_trees) pull_locom_tseries_subset() (in module mousestyles.data.utils)

R

random_exp() (in module mousestyles.GLRT_distribution) random_powerlaw() (in module mousestyles.GLRT_distribution)

remove() (mousestyles.intervals.Intervals method)

S

save() (mousestyles.intervals.Intervals method) seasonal_decomposition() (in module mousestyles.ultradian) smooth_noise() (in module mousestyles.path_diversity.smooth_noise) split_data_in_half_randomly() (in module mousestyles.data.utils)

strain_seasonal() (in module mousestyles.ultradian) subordinate_to_array() (mousestyles.intervals.Intervals method) summarize() (mousestyles.behavior.behavior_tree.BehaviorTree method) symmetric_difference() (mousestyles.intervals.Intervals method)

T

timestamps_to_interval() (in module mousestyles.intervals) total_amount() (in module mousestyles.behavior.metrics) total_time() (in module mousestyles.behavior.metrics)

total_time_rectangle_bins() (in module mousestyles.data.utils) trim() (mousestyles.intervals.Intervals method)

U

union() (mousestyles.intervals.Intervals method)